MaBS

Ewing G. and Hermisson J. (2010).
MSMS: A coalescent simulation program including recombination, demographic structure, and selection at a single locus.
Bioinformatics 26: 2064-2065.
Ewing G.B., Ebersberger I., Schmidt H.A., and von Haeseler A. (2008)
Rooted triple consensus and anomalous gene trees.
BMC Evolutionary Biololgy 8: 118.
Ewing G.B. and Rodrigo A.G. (2006)
Coalescent-based estimation of population parameters when the number of demes changes over time.
Molecular Biology and Evolution 33: 951-958.
Ewing G.B. and Rodrigo, A.G. (2006)
Estimating population parameters using the structured serial coalescent with Bayesian MCMC inference when some demes are hidden.
Evolutionary Bioinformatics Online 2: 239-247.
Ewing G.B., Nicholls G., and Rodrigo A. (2004)
Using temporally spaced sequences to simultaneously estimate migration rates, mutation rate and population sizes in measurably evolving populations.
Genetics 168: 2407 - 2420.
Ross H.A., Lento G.M., Dalebout M.L., Goode M., Ewing G.B., McLaren P., Rodrigo A.G., Lavery S., and Baker C.S. (2003)
DNA Surveillance: Web-based molecular identification of whales, dolphins and porpoises.
Journal of Heredity 94: 111-114.

Salzburger W., Ewing G.B., and von Haeseler A.
The Performance of Phylogenetic Algorithms in Estimating Haplotype Genealogies with Migration.
Systematic Biology (subm.)

Rodrigo A.G., Ewing G.B., and Drummond A.J. (2007)
The evolutionary analysis of measurably evolving populations using serially sampled gene sequences.
Mathematics of Evolution and Phylogenetics (eds. O. Gascuel and M. A. Steel), Oxford University Press.