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Ines Hellmann - Publications

 

• Pool J.E., Hellmann I., Jensen J.D., Nielsen R. (2010).
  Population genetic inference from genomic sequence variation.
  Genome Research 20: 291-300.

• Dannemann M., Lorenc A., Hellmann I., Khaitovich P., and Lachmann M. (2009).
  The effects of probe binding affinity differences on gene expression measurements and how to deal with them.
  Bioinformatics 25: 2772-2779.

• Xia Q., Guo Y., Zhang Z., ..., Hellmann I., et al. (2009).
  Complete resequencing of 40 genomes reveals domestication events and genes in silkworm (Bombyx).
  Science 326: 433-436.

• Ptak S.E., Enard W., Wiebe V., Hellmann I., Krause J., Lachmann M. and Pääbo S. (2009).
  Linkage disequilibrium extends across putative selected sites in FOXP2.
  Molecular Biology and Evolution 26: 2181-2184.

• Nielsen R., Hubisz M.J., Torgerson D., Andres A.M., Albrechtsen A., Gutenkunst R., Adams M., Cargill M., Boyko A., Indap A., Hellmann I. et al. (2009).
  Darwinian and demographic forces affecting human protein coding genes.
  Genome Research 19: 838-849.

• Wang J., Wang W., Li R., Li Y., Tian G., Goodman L., Fan W., Zhang J., Li J., Zhang J., Hellmann I. et al. (2008).
  The diploid genome sequence of an Asian individual.
  Nature 456: 60-65.

• Hellmann I., Mang Y., Gu Z., Li P., de la Vega F.M., Clark A.G. and Nielsen R. (2008).
  Population genetic analysis of shotgun assemblies of genomic sequences from multiple individuals.
  Genome Research 18: 1020-1029.

• Nielsen R., Hellmann I., Hubisz M., Bustamante C., and Clark A.G. (2007).
  Recent and ongoing selection in the human genome.
  Nature Reviews Genetics 8: 857-868.

• Weber M., Hellmann I., Stadler M.B., Ramos L., Pääbo S., Rebhan M., and Schübeler D. (2007).
  Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome.
  Nature Genetics 39: 457-466.

• Khaitovich P., Tang K., Franz H., Kelso J., Hellmann I., Enard W., Lachmann M., and Pääbo S. (2006).
  Positive selection on gene expression in the human brain.
  Current Biology 16: R356-358.

• Hellmann I., Prüfer K., Ji H., Zody M.C. Pääbo, S. and Ptak S.E. (2005).
  Why do human diversity levels vary at a megabase scale?
  Genome Research 15: 1222-1231.

• Khaitovich P., Hellmann I., Enard W., Nowick K., Leinweber M., Franz H., Weiss G., Lachmann M., and Pääbo S. (2005).
  Parallel patterns of evolution in the genomes and transcriptomes of humans and chimpanzees.
  Science 309: 1850-1854.

• Mikkelsen T.S., Hillier L.W., Eichler E.E., Zody M.C., Jaffe, D.B., Yang, S.P., Enard W., Hellmann, I., et al. (2005).
  Initial sequence of the chimpanzee genome and comparison with the human genome.
  Nature 437: 69-87.

• Khaitovich P., Muetzel B., She X., Lachmann M., Hellmann I., Dietzsch J., Steigele S., Do H.H., Weiss G., Enard W., et al. (2004).
  Regional patterns of gene expression in human and chimpanzee brains.
  Genome Research 14: 1462-1473.

• Khaitovich P., Weiss G., Lachmann M., Hellmann I., Enard W., Muetzel B., Wirkner U., Ansorge W., and Pääbo S. (2004).
  A neutral model of transcriptome evolution.
  PLoS Biology 2: E132.

• Watanabe H., Fujiyama A., Hattori M., Taylor T.D., Toyoda A., Kuroki Y., Noguchi H., BenKahla A., Lehrach H., Sudbrak R., Hellmann I. et al. (2004).
  DNA sequence and comparative analysis of chimpanzee chromosome 22.
  Nature 429: 382-388.

• Hellmann I., Zollner S., Enard W., Ebersberger I., Nickel B., and Pääbo S. (2003).
  Selection on human genes as revealed by comparisons to chimpanzee cDNA.
  Genome Research 13: 831-837.

• Sakaki Y., Watanabe H., Taylor T., Hattori M., Fujiyama A., Toyoda A., Kuroki Y., Itoh T., Saitou N., Oota S., Hellmann I. et al. (2003).
  Human versus chimpanzee chromosome-wide sequence comparison and its evolutionary implication.
  Cold Spring Harbor Symposia on Quantitative Biology 68: 455-460.

• Hellmann I. . Ebersberger I., Ptak S.E., Pääbo S., and Przeworski M. (2003).
  A neutral explanation for the correlation of diversity with recombination rates in humans.
  American Journal of Human Genetics 72: 1527-1535.